Personal preference here only - just throwing that out there to start with
I use PowerPro braid primarily for topwaters (or on 20lb mono) and pitching/flipping. Almost all other applications I rely on Fluorocarbon. I fish a big mix of clear and colored water here around NW Florida. To help conceal my braid I use a colored sharpie and run it up and down the end of the line about four to five feet from the bait or leader. I keep a full set in my Nitro and use whichever color most closely matches the water I'm fishing. In clear water I usually use a black sharpie. I know the black sounds contradictory for matching conditions but I have never really had a big problem spooking fish because of the line.
Realistically though if I'm in clear water I will more than likely opt for Fluorocarbon wherever I can, holding back on braid unless it's absolutely necessary.
As far as the actual setups you are using they should be fine.
Each line has its own merits and drawbacks.
Braid is strong, floats and has no stretch. But, braid will cut easily on any sharp objects though like metal, rocks, etc.. Also, braid can let you set the hook too hard sometimes like with jerkbaits and crankbaits which can end up pulling the hooks out.
Fluorocarbon has very little stretch, is the most abrasion resistant of the three lines, and it sinks. Also, FC becomes virtually invisible in the water. There are few disadvantages to FC unless one of its strengths causes problems, like a sinking line on a topwater.
Mono has a lot of stretch and floats. Mono works well when you need some give as a fish slams your bait - like a spinnerbait, lipless crank and so on. Mono is less abrasion resistant that FC but better than braid.
Cost factors generally have premium FC at top with Braid next and mono least expensive. (could be wrong on the top 2 since I pay close to the same price for each of them).
Braid has no memory and will last a very long time. Mono and FC both tend to develop a memory pretty quickly.
Ultimately, the conditions and cover your fishing should mandate which choice of line is the most suited. If cost is an issue, then find the middle ground and sacrifice a little in each area to get the most usable line under most of the conditions you generally fish. Go special when conditions really mandate it.
OMG I got long winded, why didn't someone stop me! :)
Seriously, if I can help with anything more specific please don't anyone ever hesitate to drop me an email, pm, post here or whatever. Always happy to help and talk fishing.