Muskies are my primary target species. (When I'm not forced to work in CA, that is...)
I run pretty much all St. Croix, Okuma, and Shimano rods, with a handful of Loomis thrown in. Most of them are paired with Calcutta 400TE, with a couple Abu Toros, Lunas, and Trinidads thrown in. I'm a huge fan of gliders, with well over 1200 baits. I think I end up buying them more for the paint than anything else. There are some fantastic painters in the muskie world.
When it comes to hooks and the like, I tend to match what was on the bait in terms of shank length and dimension. If you fail to do so, most of the time the bait just won't work right with another hook. The absolute best hooks I've come across as a replacement for most gliders and topwater baits is the VMC 9617BZ.
If you're a glider guy, try to find a Beaver "Perka". You can find them from him directly, and a few places you'll see one pop up from time to time. Warlocks are a great bait as well. Don't go chasing muskies without a 10" Weagle, either. I hae landed 3 50"+ fish on a 10", and know of at least 40 more 50" class fish to the bait. Another great glider is the Wabuull. They were recently purchased by Suick and should be in production in full.
When it comes to blade baits, there are a TON out there, in Safety-pin style baits my choice is either a Grinder, Llungen Nut-Buster, or Ruff Rad Dog.
In inlines, I have several hundred from Mayhem, a few more from Holcombe, a bunch more from Hirsch, even more from Eagletail and Mepp's.
After bicep surgery two years ago, I have never gained enough strength and coordination to fish muskies. That and I just don't get the chance since I'm in CA all the time now.
It's a sickness, a madness, a descent in the pits of the unknown. But man what RUSH it is when you pop a 50".
PM me if you are looking for specific info on things, I'll try to point you in the best direction's I know.
You might go check out the boards at Muskiefirst, too. They're super helpful and there's a greater wealth of muskie information over there than is contained in the rest of the web as a collective.