On my Native Ultimate 12 I have a modified trolling setup, similar to how bassyaks.com does theirs.
I've rigged my footpedals to be my steering, raise/lower motor, and have made a modified switch that I've rigged up next to me to go forward 5, reverse 2. It is a great setup, but I often think I'd prefer the Hobie pedal method (over the bicycle style that Native uses on their pedal yaks). I need to take some new pix, but here's an old one with an old bass pro predator trolling motor mounted.